Antigen

Antigen Class

TFs and others

Antigen

FOXA2

Cell type

Cell type Class

Breast

Cell type

MDA-MB-231

Primary Tissue

Breast

Site of Extraction

Effusion, Pleural

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

breast cancer cell line

gender

female

cell line

MDA-MB231

cell type

breast cancer

integrated vector

pCDNA3.1-Hygro-ER/pCDNA6-TR/pCDNA4-TO

transfected sirna

no

hormone treatment

10-8M Estradiol (Sigma)

chip antibody

Antibody Mix: clone 3C10 (Millipore) + ab23630 (Abcam)

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads

45043726

Reads aligned (%)

69.6

Duplicates removed (%)

6.9

Number of peaks

26304 (qval < 1E-05)

hg19

Number of total reads

45043726

Reads aligned (%)

69.1

Duplicates removed (%)

8.1

Number of peaks

26387 (qval < 1E-05)