Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA2

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast cancer cell line
gender
female
cell line
MDA-MB231
cell type
breast cancer
integrated vector
pCDNA3.1-Hygro-ER/pCDNA6-TR/pCDNA4-TO
transfected sirna
no
hormone treatment
10-8M Estradiol (Sigma)
chip antibody
Antibody Mix: clone 3C10 (Millipore) + ab23630 (Abcam)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
45043726
Reads aligned (%)
69.6
Duplicates removed (%)
6.9
Number of peaks
26304 (qval < 1E-05)

hg19

Number of total reads
45043726
Reads aligned (%)
69.1
Duplicates removed (%)
8.1
Number of peaks
26387 (qval < 1E-05)

Base call quality data from DBCLS SRA